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Hektoen Enteric Agar Protocol Send Print

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Created: Thursday, 11 November 2010
Last update: Monday, 22 July 2013


During the 19th century, the connection was made between disease processes and bacteria.  Ever since that time, microbiologists have searched for media that allow the rapid recovery of pathogenic organisms from clinical specimens, as well as differentiation between the pathogens and nonpathogens.

At the beginning of the 20th century, microbiologists referred to all non-spore-forming gram-negative bacilli as enteric organisms due to their prevalence in the intestinal tract.  However, they recognized that certain species of these enteric organisms were more pathogenic to humans than others (12).  The microbiologists also realized that these enteric organisms had distinct patterns of carbohydrate utilization and that those enteric organisms that could not utilize lactose were most likely pathogenic to humans.  They began to develop media that could differentiate between lactose-fermenting and non-lactose-fermenting organisms.  The first isolation media introduced for the recovery of pathogenic enteric organisms was called fuchsin sulfite infusion agar and was developed by S. Endo in 1903 (2).  This media allowed the isolation of these pathogens, but did not inhibit the normal, nonpathogenic enteric organisms also present in feces.  Discrimination between the lactose-fermenting enteric organisms and the pathogenic organisms (which are usually non-lactose-fermenting) was difficult because the red color formed by the fermentation of lactose occurred in the media and not in the colonies.  When organisms were close together on the agar plate, it was difficult to tell which ones fermented lactose and which ones did not (2).  In 1905, MacConkey agar was introduced by Alfred MacConkey (7).  MacConkey, utilizing the work done by Fermi in 1898 on the effects of various chemical substances on the inhibition of bacteria (7), added bile in the form of sodium taurocholate to his media.  The bile inhibited the gram-positive nonpathogenic enteric organisms allowing only gram-negative rods to grow.  The addition of lactose and the dye neutral red allowed differentiation by color of the lactose-fermenting (nonpathogenic) and the non-lactose-fermenting (usually pathogenic) organisms.  Eosin methylene blue (EMB) agar followed in 1916, introduced by J. E. Holt-Harris and Oscar Teague (2).  EMB media allowed a visual distinction between Bacillus coli (now known as Escherichia coli), other nonpathogenic lactose-fermenting enteric gram-negative rods, and the Salmonella and Shigella genera.  These media allowed the recovery and differentiation of suspect organisms belonging to the genera Salmonella and Shigella. The advantage of both MacConkey and EMB media over Endo agar was that the color change produced by the fermentation of lactose appeared in the colony itself, and not the media, making the pathogens easily distinguishable from the normal enteric organisms in the specimen (2, 7).  The color was present in the colonies rather than in the media so even colonies growing in close proximity to one another could be differentiated. 

MacConkey and EMB media are only moderately inhibitory and most enteric gram-negative rods grow readily on both, occasionally obscuring the pathogenic organisms.  Thus, more selective media was needed to enhance the recovery of Salmonella and Shigella from contaminated specimens.  Microbiologists soon began searching for more selective media (4).  They looked for new inhibitory agents and they added higher concentrations of known inhibitory substances to their media to inhibit the growth of nonpathogenic enteric organisms.  In 1916, Teague and A. W. Clurman determined that brilliant green dye inhibited most of the nonpathogenic enteric gram-negative rods (11).  Their medium, brilliant green agar, enhanced the recovery of Salmonella from patients with typhoid fever.  Einar Leifson described desoxycholate media in 1935 (5).  He used desoxycholic acid and its salts as the inhibitory agent.  In 1941, Catherine Mayfield and Maud Gober developed Salmonella Shigella agar (8).  Unfortunately, this media was discovered to be overly selective and some strains of Shigella were missed (4, 10).  In 1965, xylose lysine decarboxylase agar was introduced by Welton I. Taylor for the enhanced recovery of Shigella (4).  Most recently, Hektoen enteric (HE) agar was introduced in 1968 as another option in the arsenal of selective and differential media utilized by clinical microbiologists trying to recover Salmonella and Shigella from clinical specimens (4). 

Sylvia King and William I. Metzger, working at the Hektoen Institute in Chicago, formulated HE agar (4).  Their goal was to increase the recovery of Shigella species from mixed cultures.  They enriched the media with extra amounts of carbohydrates and peptones to offset the inhibitory effects of the bile salts.  The two dyes added to the media, bromthymol blue and acid fuchsin, have lower toxicity than other dyes, thus pathogen recovery was improved (4).  HE agar is currently used as both a direct and indirect plating medium for fecal specimens to enhance the recovery of species of Salmonella and Shigella from mixed normal fecal flora. 

Modification and refinement by later microbiologists of their predecessors’ formulas has been ongoing.  As a result, much of the media discussed in this history is still available and is still used in microbiology labs around the world.  In addition, new selective and differential media for Salmonella and Shigella continues to be developed and made available for use by clinical microbiologists (12).


Hektoen enteric agar is used to recover gastrointestinal pathogens, such as Salmonella and Shigella, from food, water, and fecal samples suspected of containing these organisms.  Because of its selective nature, it inhibits most nonpathogenic enteric organisms and thus is used in clinical microbiology to recover Salmonella and Shigella from feces.  It is also a differential medium that allows microbiologists to note visual differences in colony morphology and quickly eliminate nonpathogenic gram-negative rods from pathogenic gram-negative rods with minimal additional testing.

HE agar can be used for the primary plating of fecal specimens.  It may also be used to subculture the overnight growth from enrichment broths (such as gram-negative broth or selenite broth) inoculated with fecal specimens suspected of containing low numbers of Salmonella.  Direct inoculation of colonies from agar plates may produce sufficient growth of organisms that would otherwise be inhibited in a more dilute inoculum from diarrheal feces or broth culture.


Hektoen enteric agar is a selective and differential media for the isolation and differentiation of enteric pathogens from clinical specimens.  Animal peptones and yeast extract provide the nutritive base (Hektoen enteric agar instructions for use package insert; Remel, Lenexa, KS).

The presence of the bile salts and dyes inhibit most gram-positive organisms allowing only gram-negative rods to grow on HE agar (4, 5, 7, 9, 11).  The high concentration of bile salts partially or fully inhibits most of the nonpathogenic coliform flora of the intestinal tract (4, 5, 7, 9, 11).  Since the enteric pathogens Salmonella and Shigella can tolerate these inhibitory substances they generally grow faster and larger than the coliforms.

The fermentation of carbohydrates such as lactose, sucrose, and salicin, is one of the differentiating characteristics used to identify the coliforms.  Salmonella and Shigella are unable to utilize these three specific carbohydrates, whereas most nonpathogenic coliforms can use at least one of them.  Thus, the nonpathogenic coliforms, if they are able to grow in the presence of the bile salts, will produce orange-yellow colonies due to the production of acid from at least one of the carbohydrates.  This acid causes the bromthymol blue indicator to change from its neutral green color to an orange-yellow color. The bile salts may precipitate out of the media and appear as a hazy zone around the colonies.  This is due to the acid produced by the utilization of the lactose, sucrose, or salicin interacting with the bile salts present in the media (6).   If a lactose- and sucrose-negative organism utilizes salicin, salmon-pink to orange-yellow colonies will be present.  The inability of Salmonella and Shigella to produce acid from the utilization of lactose, sucrose, or salicin results in colonies that are translucent, light green, or greenish blue and allows them to be quickly differentiated from nonpathogenic organisms.  Additional testing must then be performed on these colonies to confirm or rule out the presence of Salmonella or Shigella

The production of H2S by certain enteric gram-negative rods, such as Salmonella, can be detected on HE agar due to the addition of thiosulfate and ferric ammonium citrate to the formula.  Salmonella produces bacterial enzymes that cause a sulfide molecule to be released from the thiosulfate present in the media.  This sulfide molecule then couples with a hydrogen ion to form H2S gas.  The H2S gas reacts with the ferric ammonium citrate, forming a precipitate, resulting in colonies that are black or have a black center (12).  Other nonpathogenic enteric organisms, such as Proteus sp. and Citrobacter freundii, also produce H2S, but these organisms are usually inhibited by the bile salts in the HE agar.  If these organisms can overcome the inhibitory effects of the bile salts and grow, they usually can be differentiated from the pathogens because Proteus and Citrobacter freundii can utilize at least one of the carbohydrates present in the HE agar.  An orange-yellow colony with a black center is most likely not an intestinal pathogen, although rare strains of Salmonella are capable of lactose fermentation and would appear this way.

Since HE agar is primarily a screening agar, additional testing is required to confirm or rule out Salmonella or Shigella.  Several options are available for confirmatory testing ranging from commercial identification kits (e.g., API 20E, MicroID, Enterotube, Microscan panels) to tubed biochemicals (e.g., TSI agar, KIA agar, LIA agar, urea agar, lysine decarboxylase) to serological typing of somatic and capsular antigens.


Hektoen enteric agar may be purchased as prepared agar plates from various suppliers of microbiological media.  Follow the manufacturer’s recommendation for quality control and storage of prepared plates. 

Hektoen enteric agar can also be prepared from dehydrated powder available from various suppliers of dehydrated media.  Be sure to prepare the medium according to the manufacturer’s directions.

 Ingredients for Hektoen enteric agar per liter of purified water (1)

Proteose, peptone 12 g Sodium chloride   5 g
Yeast extract   3 g Sodium thiosulfate   5 g
Bile salts no.3   9 g Ferric ammonium citrate   1.5 g
Lactose 12 g Agar  14 g
Saccharose 12 g Bromthymol blue   0.065 g
Salicin   2 g Acid fuchsin   0.1 g

Suspend the components listed above in 1 liter of purified water. Mix thoroughly. Heat with frequent agitation to boiling to completely dissolve the components. Do not overheat. Do not autoclave. Dispense into 100-mm diameter sterile petri dishes, allowing approximately 20 to 25 ml of liquid per plate. Allow to solidify at room temperature, then store at 4 to 8°C in plastic to minimize dehydration during storage. Minimize exposure of the plates to light. Hektoen enteric agar is stable for approximately 70 days  from the date of preparation (Remel Technical Services, personal communication). Each lab should verify the quality and functionality of each batch of prepared media by testing known strains of organisms periodically as the 70-day expiration date approaches. 

Quality assurance procedures (1)


• The dehydrated powder should appear light purplish beige, homogeneous, and free flowing.

• The prepared medium should appear brown with a greenish cast and slightly opalescent prior to pouring the plates.

• The prepared plates should appear green with a yellowish cast and slightly opalescent. The agar surface should be smooth and moist, but without excessive moisture. Do not use plates if drying or cracking of the agar is apparent, or if there is evidence of microbial contamination.

• The pH must be 7.5 ± 0.2 at 25°C for optimum results.

Performance characteristics:

Once the HE agar plates have solidified, several plates should be removed from each batch and tested against organisms with known characteristics. Recommended organisms and their growth characteristics are shown in Table 1. Using a sterilized inoculating loop streak each organism onto a plate so that the growth of isolated colonies is achieved. Incubate 18 to 24 hours at 35°C and examine the plates for growth. If the expected results are not seen, do not use the media. 

   TABLE 1. Recommended quality control organisms and expected reactions (1)
(Hektoen enteric agar instructions for use package insert; Remel, Lenexa, KS)



Color of colony

Enterobacter aerogenes ATCCa 13048

Fair to good


Escherichia coli ATCC 25922

None to fair

(may have bile precipitate)

Salmonella enterica ATCC 13076



Salmonella typhimurium ATCC 14028



Shigella flexneri ATCC 12022



Streptococcus faecalis ATCC 29212


     aAmerican Type Culture Collection, Manassas, VA   

     bMay have a black center due to H2S production.


1.   Streak a plate of HE agar using the quadrant streak plate method (3) to obtain isolated colonies. Well-isolated colonies will provide the best results in the biochemical differentiation of bacteria using HE agar.  The inoculum may be obtained from several different sources.  Follow the instructions below for the source that meets the requirements of your laboratory activity.

   a.   Source:  a previously inoculated and incubated culture plate of the organism to be tested grown on blood agar, MacConkey agar, EMB agar, tryptic soy agar, etc.  (see Comments and Tips)
        i.     Using a sterile inoculating loop touch one isolated colony from the source plate and transfer this to the HE agar plate.  Use the quadrant streak plate method to obtain isolated colonies of the organism. (see Comments and Tips)

   b.    Source: feces from human or animal sources.

        i.     Working under a biological safety hood, insert a sterile swab into the fecal specimen to be tested.

        ii.     Roll the swab across one-third of the HE agar plate.  Discard the swab into an appropriate container.
        iii.     With a sterile inoculating loop, use the quadrant streak plate method to obtain isolated colonies of the organism.

   c.     Source: an enrichment broth such as selenite broth or gram-negative broth.

        i.     Insert a sterile swab into the enrichment broth.
        ii.     Roll the swab across one-third of the HE agar plate.  Discard the swab into an appropriate container.
        iii.    With a sterile inoculating loop, use the quadrant streak plate method to obtain isolated colonies of the organism.

   d.    Source: an environmental sample or food source.

        i.     The preculturing of foods for the recovery of pathogenic enteric organisms is dependent on the type of food being cultured. Consult a reputable source such as the FDA's Bacteriological Analytical Manual (13) for instructions on handling food items.

2.   Incubate the HE agar plate at 35 to 37°C in an aerobic incubator for 18 to 24 hours.  Do not incubate in a CO2 atmosphere as this produces acid and will alter the pH of the medium.

3.   Examine the isolated colonies for color reaction and whether or not a black precipitate is present in the colonies.  Do not examine areas of confluent growth as false negative fermentation reactions may occur (see Limitations).  Areas of confluent growth may also contain mixed organisms.  Refer to the interpretative guidelines in Table 2 and the images later in this protocol.

4.   Perform follow-up testing as needed for your laboratory activity.

Discard plates into an appropriate waste container.

TABLE 2. Interpreting HE agar reactions (1, 6) (Hektoen enteric agar instructions for use  package insert; Remel, Lenexa, KS) 



Growth on the HE agar plate

The organism is not inhibited by bile salts

Yellow or orange precipitate around the colonies

Bile salts have been precipitated by the organism.  Typical of some nonpathogens


Fermentation of lactose, sucrose, or salicin; not likely to be an enteric pathogen

Salmon to orange

Fermentation of salicin, not likely to be an enteric pathogen

Yellow, salmon to orange with black centers

Fermentation of one of the carbohydrates plus the production of H2S; not likely to be an enteric pathogen (other than the rare lactose-fermenting Salmonella)

Greenish-blue, light green, or transparent

No fermentation present, suspect Shigella; confirm with additional tests

Greenish-blue, light green, or transparent with black centers

No fermentation present, H2S production present, suspect Salmonella, confirm with additional tests



     FIG. 1.  Salmonella enterica.  Note the black center of the transparent colonies indicating H2S production in the absence of carbohydrate utilization.  All serotypes of Salmonella have this appearance on HE agar except for serotype Typhi, which is a weak H2S producer, and rare strains of lactose-fermenting Salmonella.


     FIG. 2.  Shigella flexneri.  The colonies are transparent, indicating the absence of carbohydrate utilization and no H2S production.  All species of Shigella have this appearance on HE agar.

     FIG. 3.  Enterobacter aerogenes.  The colonies are yellow orange, indicating the utilization of at least one of the carbohydrates present in the media. No H2S is produced.  The orange haze around the colonies is due to the precipitation of the bile salts by the organism.  The appearance of E. aerogenes on HE agar is typical of most nonpathogenic enteric gram-negative rods.

     FIG. 4. Salicin-fermenting strain of Proteus vulgaris (50% of strains are positive).  The colonies are more yellow than orange and flatter than Enterobacter aerogenes.  There is no precipitation of the bile salts by this organism.


 Interpretation of carbohydrate utilization must be determined within 18 to 24 hours of the start of the incubation period.  If the HE agar plates are allowed to incubate longer than 24 hours, the carbohydrates present in the medium may be exhausted by the continuing metabolic fermentation of these substrates by the organism.  At this point, acid production ceases.  The organism then begins to utilize the peptones and proteins present in the medium.  This utilization produces alkaline end products that might overcome the acid production that occurred during the first 24-hour period, causing a loss of the yellow or orange colony color.  Thus, the organism would be interpreted as not utilizing any of the carbohydrates and would appear as a suspect pathogen.

 This media should only be used as a screening media.  Additional testing is required to confirm the presence of Salmonella or Shigella from HE agar.

 This medium should not be used alone for the recovery of intestinal pathogens.  It should be used as part of a battery of selective and nonselective media when attempting to recover intestinal pathogens from human and animal fecal specimens.


The ASM advocates that students must successfully demonstrate the ability to explain and practice safe laboratory techniques. For more information, read the laboratory safety section of the ASM Curriculum Recommendations: Introductory Course in Microbiology and the Guidelines for Biosafety in Teaching Laboratories.


•  During storage of the HE agar plates, the bile salts may crystallize and precipitate out into the media.  This will not affect the performance of the HE agar (Hektoen enteric agar instructions for use package insert; Remel, Lenexa, KS). 

 Liquid medium should be hunter green prior to pouring.  Be sure to allow the liquid medium to cool prior to pouring.

 Although the author has had no problems with deterioration of plates prepared from dehydrated powder during the suggested stability time frame of 70 days, some reviewers indicated that their HE agar, prepared from dehydrated powder, is not that stable.  Some recommended an expiration date of 1 week.   

 Inhibition of growth does not necessarily equal prevention of all growth.  Growth may take longer to appear and the colonies may be smaller than those seen on other media for enteric gram-negative rods. 

 When transferring growth from a previously inoculated plate for subculture (see Protocol, section 1a), lab instructors may want to have the students make a light suspension of the organism in sterile saline or sterile water prior to inoculation of the HE agar.  If too much organism is transferred to the HE agar from another plate, the organism may be able to overcome the inhibitory properties of the HE agar.


1.  Difco.  1984. Difco manual, 10th ed. Difco Laboratories, Detroit, MI.
2.  Holt-Harris, J. E., and O. Teague. 1916. A new culture medium for the isolation of Bacillus typhosa from stools. 18:596–600.
3.  Katz, S. 2008. The streak plate protocol.  Microbe Library, American Society for Microbiology, Washington, DC. 
4.  King, S., and W. I. Metzger. 1968. A new plating medium for the isolation of enteric pathogens: I. Hektoen enteric agar.  Appl. Microbiol. 16:577–578.
5.  Leifson, E. 1935. New culture media based on sodium desoxycholate for the isolation of intestinal pathogens and for the enumeration of colon bacilli in milk and water.  J. Pathol. Bacteriol. 40:581–599.
6.  MacConkey, A. T. 1900. Note on a new medium for the growth and differentiation of the Bacillus coli communis and the Bacillus typhi abdominalis. Lancet ii:20.
7.  MacConkey, A. 1905. Lactose-fermenting bacteria in feces. J. Hyg. 5:333–378.
8.  Mayfield, C. R., and M. Gober.  1941. Comparative efficiency of plating media for the isolation of Shigella dysenteriae. Am. J. Public Health 31:363–368.
9.  Paulson, M. 1937. The clinical use of desoxycholate and desoxycholate-citrate agars—new culture media—for the isolation of intestinal pathogens. Am. J. Med. Sci. 193:688–690.
10.  Taylor, W. I. 1965. Isolation of shigellae. I. Xylose lysine agars; new media for isolation of enteric pathogens. Am. J. Clin. Pathol. 44:471–475.
11.  Teague, O., and A. W. Clurman. 1916. An improved brilliant green medium for the isolation of typhoid bacilli from stools. J. Infect. Dis. 18:647–652.
12.  Winn,
W., Jr., et al. 2006. Konemann’s color atlas and diagnostic text of microbiology, 6th ed., p. 212–302. Lippencott Williams & Wilkins Publishers, Philadelphia, PA.
13.   U.S.
Food and Drug Administration.  2009.  Bacterial analytical manual. Chapter 1.  Food sampling/preparation of sample homogenate.  U.S. Food and Drug Administration, Washington, DC.


This resource was peer-reviewed at the ASM Conference for Undergraduate Educators 2010.

Participating reviewers:

Donald P. Breakwell
Brigham Young University, Provo, UT

Benita Brink
Adams State College, Alamosa, CO

Rebecca Buxton
University of Utah, Salt Lake City, UT

Laura Cathcart
University of Maryland, College Park, MD

Michel J. Cloutier
St. Louis College of Pharmacy, St. Louis, MO

J. Brooks Crozier
Roanoke College, Salem, VA

Denise Foley
Santiago Canyon College, CA

Janice Haggart
North Dakota State University, Fargo, ND

Anne Hanson
University of Maine, Orono, ME

Daniel Hanson
Washington University, St. Louis, MO

Roxana Hughes
University of North Texas, Denton, TX

D. Sue Katz
Rogers State University, Claremore, OK

Archana Lal
Independence Community College, Independence, KS

Min-Ken Liao
Furman University, Greenville, SC

Karen Reiner
Andrews University, Berrien Springs, MI

Patricia Shields
University of Maryland, College Park, MD

Amy Siegesmund
Pacific Lutheran University, Tacoma, WA

Erica Suchman
Colorado State University, Ft. Collins, CO

Kathryn Wise
Minnesota State University, Moorhead, MN

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